LabTools

PLEASE IGNORE LINKS WRITTEN IN JAPANESE or "?"

LabTools †

RubyTools - manual for tiny tools written in Ruby
BashTips - tips for Bash shell and Cygwin system

Human Genome Data Bases †

ＰubMed

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed

NCBI Human Genome Map

http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi

NCBI Mouse Genome Map

http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=10090

NCBI BLAST the human genome

http://www.ncbi.nlm.nih.gov/genome/seq/page.cgi?F=HsBlast.html&&ORG=Hs

NCBI BLAST the mouse genome

http://www.ncbi.nlm.nih.gov/genome/seq/MmBlast.html

Marchfield Clinic, Center for Medical Genetics(Genetic Marker Map)

http://research.marshfieldclinic.org/genetics/

Univ. California at Santa Cruz (UCSC), Genome Biometrics

http://genome.ucsc.edu/

GDB - The Genome Database

http://www.gdb.org

CHLC（チェルシー） - The Cooperative Human Linkage Center（更新がすでに終了しているため情報が古いですがNCBIにない情報があることも）

http://gai.nci.nih.gov/CHLC/

CHPH（セフ） Genotype Database - The Centre d'Etude du Polymorphisme Humain

http://www.cephb.fr/test/cephdb/eng/

Corriel Institure - CEPH family information etc..

http://coriell.umdnj.edu/

Corriel Institure NIGMS CEPH reference families Repositories

http://ccr.coriell.org/nigms/ceph/ceph.html

CIDR（サイダー） The Center for Inherited Disease Research

http://www.cidr.jhmi.edu/index.html

Genotypes DB at Washington Univ. at St.Louis（1996年の更新が最後ですがNCBIと異なる事があるのでチェック）

http://www.genlink.wustl.edu/gtypes/gtypes_home.html

IsoFinder?

http://bioinfo2.ugr.es/IsoF/isofinder.html

Human SNP databases †

International ＨapMap Project -

http://www.hapmap.org/

JSNPs - 東京京大学医科学研究所ヒトゲノム解析センター/科学技術振興事業団

http://snp.ims.u-tokyo.ac.jp/index_ja.html

Applied Biosystems / Celera SNPs search（無料のユーザー登録が必要です）

http://myscience.appliedbiosystems.com/index.jsp

NCBI-dbSNP

http://www.ncbi.nlm.nih.gov/SNP/index.html

TSC - The SNP Consortium

http://snp.cshl.org/

GeneSNPs - Univ. of Utah

http://www.genome.utah.edu/genesnps/

SeattleSNPs - The Univ of Washington-FHCRC Variation Discovery Resource

http://pga.gs.washington.edu/

Definitive Haplotype Database (D-HaploDB) - Kyushu niversity

http://orca.gen.kyushu-u.ac.jp/

Human cDNA databases †

H-Invitational database

http://www.h-invitational.jp/

Gene Expression Databeses †

COGENE - the Craniofacial and Oral Gene Expression Network

http://hg.wustl.edu/COGENE/

GEN - Gene Expression Notebook

http://www.informatics.jax.org/mgihome/GXD/GEN/

JAX - Gene Expression Database

http://www.informatics.jax.org/mgihome/GXD/aboutGXD.shtml

emap - the Edingurgh Mouse Atlas Project

http://genex.hgu.mrc.ac.uk/intro.html

Utilities †

Pub Med ID to Bib TeX converter gateway　（ＰubMed IDを入れるとＢibTeX用の文献リストを吐き出してくれます。ＢioRubyを使っています）

http://misshie.jp/pm2bibtex/ |pm2bibtexの使い方:pm2bibtex

Unit Exchange - SI <-> Feet/Pound

http://www6.ocn.ne.jp/~b-lab/dnd/dnd_h_w.htm

PROGENY - pedigree management software

http://www.progeny2000.com/

PROGENY 日本語版

http://progeny.cicdata.co.jp/

Univ of Iowa DNA Facility

http://dna-9.int-med.uiowa.edu/

Repeat Masker - 繰り返し配列除去ツール

http://www.repeatmasker.org/

Primer3 - PCRプライマー設計ツール

http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi

GOLD - Graphical Overview of Linkage Disequilibrium (Univ. of Michigan)

http://www.sph.umich.edu/csg/abecasis/GOLD/

HaploView(MIT) - LD and Haplotype block calculation and visualization tool written in Java

http://www.broad.mit.edu/personal/jcbarret/haplo/

BioEdit - Sequence Alignment tool for Windows

http://www.mbio.ncsu.edu/BioEdit/bioedit.html

Usage Memo(Japanese)

PolyPhen? - prediction of functional effect of human nsSNPs

http://genetics.bwh.harvard.edu/pph/index.html

PipMaker? - Aligning Genomic DNA sequeces

http://pipmaker.bx.psu.edu/pipmaker/

Bio Informatics †

Bio Perl

バイオインフォマティクス用Perlパッケージ:http://bioperl.org/

BioRuby?

国産バイオインフォマティクス用Rubyプロジェクト:http://bioruby/

Excel VBA倉庫

ExcelVba

Companies †

Applied Biosystems (ABI)

http://www.appliedbiosystems.com/

Illumina

http://www.illumina.com/

Meta-Link †

分子生物学研究用ツール集

http://www.geocities.co.jp/Technopolis/1364/

An Alphabetic List of Genetic Analysis Software

http://linkage.rockefeller.edu/soft/

Journals †

Nature Genetics

http://www.nature.com/ng/

Nature Reviews Genetics

http://www.nature.com/nrg/

Science

http://www.sciencemag.org/

American Journal of Human Genetics

http://www.journals.uchicago.edu/AJHG/home.html

Organizations †

American Cleft Palate-Craniofacial Association

http://www.cleftpalate-craniofacial.org/

ACPA Annual Meeting 2004

http://www.acpa-cpf.org/EducMeetings/annualmeeting/2004/AM2004splash.htm

American Society of Human Genetics

http://www.ashg.org/

Miscellaneous †

The Wnt gene Homepage - Dr.Nusse at Stanford Univ.

http://www.stanford.edu/~rnusse/wntwindow.html

Web resource of genetic linkage analysis

http://linkage.rockefeller.edu/